Transform Raw T1 MRI to Talairach-MNI template-SPM

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Anatomy Normalization (using AimsMIRegister)
Baladin Normalization Pipeline
Baladin Normalization to AIMS converter
FSL Normalization Pipeline
FSL Normalization to AIMS converter
Import FreeSurfer grey/white segmentation to Morphologist
Import MCRIBS dHCP preterm subject into a brainvisa database
mni_from_talairach
Normalization pipeline
Prepare Subject for Anatomical Pipeline
Reorient Anatomy
set_image_normalization
Simplified Morphologist 2025
Skull-stripped brain normalization
SPM Normalization Pipeline
Talairach Transformation From Normalization

Associated formats

Matlab file
Transformation matrix

Associated ontology rules

  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>_TO_Talairach-MNI
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>_TO_Talairach-MNI
  • morphologist-bids-1.0 :
    • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>_TO_Talairach-MNI
  • morphologist-bids-2.0 :
    • sub-{subject}/ses-{session}/{bids}/registration/sub-<subject>_ses-<session>_<bids>_T1w_TO_MNI152

    Key attributes

  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition
  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids